I'm not exactly sure what you mean by "fuzzies" but if it's what I think you mean (raised grain) then that is normal with water based dye. That's why I use water based dyes only where it's ok to raise the grain even though I think it gives better color than the other options. And it also depends on the wood you are using, soft or hard wood.
You can get a little bit of raised grain with spirit based and I've even got a tiny bit with NGR dyes but no where near that of water based. Just touch it up with 400 or 600 grit paper and you will have a super base to start your finish. Remember I am speaking from an instrument makers point of view here, so 600 might be serious overkill on a canoe but something (fine sanding pad, Grey Scuff-Rite pad) to lightly knock the "fuzzies" off.
Another use for the ready made spirit dye is as an additive to your french polish/shellac. For necks on some of my Period Guitars, (19th century copies) I make my varnish using a black (Mohawk brand) spirit aniline dye. The necks for these instruments were "Ebonized" or ebony veneered so by putting the lac flakes and other gums to dissolve right in the bottled dye makes for an excellent black spirit varnish. Applying this over some nice poplar and you would swear, except for the lack of weight giving it away, you had an excellent, flawless piece of ebony.
Again, this might be too much for canoe work but it's a bit of info to give some idea of what one can do with these products.